Variant report

Variant	rs7737381
Chromosome Location	chr5:37714124-37714125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:37713205..37715908-chr5:37718081..37720863,2	K562	blood:
2	chr5:37713779..37717092-chr5:37718712..37720863,3	K562	blood:
3	chr5:37713167..37714874-chr5:37723361..37725833,2	K562	blood:

Variant related genes	Relation type
ENSG00000082068	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10054979	0.81[AFR][1000 genomes]
rs10055929	0.83[AMR][1000 genomes]
rs10058348	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064268	1.00[AMR][1000 genomes]
rs10065144	0.81[AFR][1000 genomes]
rs10067274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069946	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071998	0.83[AMR][1000 genomes]
rs10072096	1.00[AMR][1000 genomes]
rs10072199	1.00[AMR][1000 genomes]
rs10074395	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11954051	0.83[AMR][1000 genomes]
rs11957206	0.83[AMR][1000 genomes]
rs11957694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358095	1.00[AMR][1000 genomes]
rs13359573	0.83[AMR][1000 genomes]
rs13436949	1.00[AMR][1000 genomes]
rs2972940	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2973065	1.00[AMR][1000 genomes]
rs2973071	1.00[AMR][1000 genomes]
rs2973072	1.00[AMR][1000 genomes]
rs2973073	0.83[AMR][1000 genomes]
rs34034635	0.83[AMR][1000 genomes]
rs7709443	0.83[AMR][1000 genomes]
rs7723792	0.83[AMR][1000 genomes]
rs7730584	1.00[AMR][1000 genomes]
rs9292667	0.83[AMR][1000 genomes]
rs983657	1.00[AMR][1000 genomes]
rs983658	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37685200-37743200	Weak transcription	Gastric	stomach
2	chr5:37685400-37717600	Weak transcription	Pancreas	Pancrea
3	chr5:37685600-37727000	Weak transcription	Lung	lung
4	chr5:37687200-37720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:37688400-37721400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:37688400-37721400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:37688400-37723600	Weak transcription	Placenta	Placenta
8	chr5:37689600-37726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:37692200-37721200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:37695200-37716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:37695400-37715600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:37695400-37722600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:37695600-37721200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:37696000-37717000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:37696400-37717200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:37696800-37717000	Weak transcription	HSMM	muscle
17	chr5:37696800-37717400	Weak transcription	Small Intestine	intestine
18	chr5:37696800-37722800	Weak transcription	Psoas Muscle	Psoas
19	chr5:37697000-37717000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:37697000-37721400	Weak transcription	Fetal Thymus	thymus
21	chr5:37697000-37743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:37697200-37717000	Weak transcription	NH-A	brain
23	chr5:37697400-37717000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:37697400-37717200	Weak transcription	Hela-S3	cervix
25	chr5:37697400-37722200	Weak transcription	HMEC	breast
26	chr5:37698800-37716400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:37698800-37721000	Weak transcription	Dnd41	blood
28	chr5:37699000-37717400	Weak transcription	Ovary	ovary
29	chr5:37699200-37717000	Weak transcription	Fetal Intestine Large	intestine
30	chr5:37699200-37717600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:37699800-37717000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:37699800-37720600	Weak transcription	Adipose Nuclei	Adipose
33	chr5:37700400-37717400	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:37701000-37717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:37701200-37717600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr5:37701400-37721200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:37702200-37721200	Weak transcription	GM12878-XiMat	blood
38	chr5:37702800-37723400	Weak transcription	Thymus	Thymus
39	chr5:37703600-37717600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr5:37703600-37717600	Weak transcription	Left Ventricle	heart
41	chr5:37703600-37722800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr5:37703800-37721600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr5:37704400-37735400	Weak transcription	Brain Angular Gyrus	brain
44	chr5:37704600-37726800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:37705400-37724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:37706200-37717200	Weak transcription	Primary T cells from cord blood	blood
47	chr5:37706200-37721200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr5:37706600-37720000	Weak transcription	Primary B cells from cord blood	blood
49	chr5:37709000-37717600	Weak transcription	Fetal Kidney	kidney
50	chr5:37710200-37735400	Weak transcription	Brain Substantia Nigra	brain

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