Variant report

Variant	rs10089745
Chromosome Location	chr8:107234782-107234783
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10093257	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10107505	0.95[ASN][1000 genomes]
rs1018144	1.00[ASN][1000 genomes]
rs10955416	0.95[ASN][1000 genomes]
rs11776161	0.89[ASN][1000 genomes]
rs11988559	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11991394	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11992727	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11993758	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11993836	1.00[ASN][1000 genomes]
rs12542585	1.00[ASN][1000 genomes]
rs12544592	1.00[ASN][1000 genomes]
rs12544655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545291	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548002	1.00[ASN][1000 genomes]
rs12550138	1.00[ASN][1000 genomes]
rs13253589	0.90[ASN][1000 genomes]
rs13254484	0.92[ASN][1000 genomes]
rs13258311	0.89[ASN][1000 genomes]
rs13258847	0.97[ASN][1000 genomes]
rs13263422	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13265563	0.93[ASN][1000 genomes]
rs13276258	0.92[ASN][1000 genomes]
rs13278474	0.94[ASN][1000 genomes]
rs13278500	0.89[ASN][1000 genomes]
rs13280148	1.00[ASN][1000 genomes]
rs13280954	0.90[ASN][1000 genomes]
rs13282023	1.00[ASN][1000 genomes]
rs1354343	0.89[ASN][1000 genomes]
rs1393974	0.86[ASN][1000 genomes]
rs1393975	0.88[ASN][1000 genomes]
rs1393978	1.00[ASN][1000 genomes]
rs1393979	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393980	1.00[ASN][1000 genomes]
rs1503563	0.92[ASN][1000 genomes]
rs1503564	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1503565	0.87[ASN][1000 genomes]
rs1503566	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1503567	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1566787	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17327114	0.94[ASN][1000 genomes]
rs2062825	0.98[ASN][1000 genomes]
rs2062826	0.98[ASN][1000 genomes]
rs2174174	0.91[ASN][1000 genomes]
rs2174175	0.91[ASN][1000 genomes]
rs2345577	0.90[ASN][1000 genomes]
rs4734906	0.95[ASN][1000 genomes]
rs7011923	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7818179	1.00[ASN][1000 genomes]
rs7818245	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824921	0.87[ASN][1000 genomes]
rs7845798	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs950036	0.88[ASN][1000 genomes]
rs967084	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2533164	chr8:107233777-107236814	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1956904	chr8:107234060-107236147	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv19179	chr8:107234068-107235610	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3479750	chr8:107234098-107236084	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3479751	chr8:107234132-107236053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3479753	chr8:107234216-107235975	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv1804055	chr8:107234375-107240209	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107234200-107236600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links