Variant report

Variant	rs11993836
Chromosome Location	chr8:107230594-107230595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089745	1.00[ASN][1000 genomes]
rs10093257	0.92[ASN][1000 genomes]
rs10107505	0.95[ASN][1000 genomes]
rs1018144	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955416	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[ASN][1000 genomes]
rs11776161	0.89[ASN][1000 genomes]
rs11988559	0.85[ASN][1000 genomes]
rs11991394	0.93[ASN][1000 genomes]
rs11992727	0.87[ASN][1000 genomes]
rs11993758	0.90[ASN][1000 genomes]
rs12542585	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544592	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544655	1.00[ASN][1000 genomes]
rs12545291	1.00[ASN][1000 genomes]
rs12548002	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550138	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253589	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13254484	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13258311	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13258847	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13263422	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265563	0.93[ASN][1000 genomes]
rs13276258	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278474	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13278500	0.89[ASN][1000 genomes]
rs13280148	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280954	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13282023	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354343	0.89[ASN][1000 genomes]
rs1393974	0.86[ASN][1000 genomes]
rs1393975	0.88[ASN][1000 genomes]
rs1393976	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs1393978	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393979	1.00[ASN][1000 genomes]
rs1393980	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503563	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1503564	0.87[ASN][1000 genomes]
rs1503565	0.87[ASN][1000 genomes]
rs1503566	0.90[ASN][1000 genomes]
rs1503567	0.90[ASN][1000 genomes]
rs1566787	0.90[ASN][1000 genomes]
rs17327114	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2062825	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2062826	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2174174	0.91[ASN][1000 genomes]
rs2174175	0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs2345577	0.90[ASN][1000 genomes]
rs4734906	0.95[ASN][1000 genomes]
rs7011923	0.87[ASN][1000 genomes]
rs7818179	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818245	1.00[ASN][1000 genomes]
rs7824921	0.87[ASN][1000 genomes]
rs7845798	0.95[ASN][1000 genomes]
rs950036	0.88[ASN][1000 genomes]
rs967084	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107225400-107231000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:107228000-107230800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:107230000-107232200	Enhancers	Osteobl	bone
4	chr8:107230000-107232400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:107230000-107232600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:107230200-107231600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:107230200-107232400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:107230400-107232000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:107230400-107232000	Enhancers	Colon Smooth Muscle	Colon
10	chr8:107230400-107232400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:107230400-107232600	Enhancers	Fetal Heart	heart

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