Variant report

Variant	rs1503566
Chromosome Location	chr8:107219180-107219181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089745	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10093257	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10107505	0.94[ASN][1000 genomes]
rs1018144	0.90[ASN][1000 genomes]
rs10955416	0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11776161	0.90[ASN][1000 genomes]
rs11988559	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11991394	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11992727	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11993758	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11993836	0.90[ASN][1000 genomes]
rs12542585	0.90[ASN][1000 genomes]
rs12544592	0.90[ASN][1000 genomes]
rs12544655	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12545291	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548002	0.90[ASN][1000 genomes]
rs12550138	0.90[ASN][1000 genomes]
rs13253589	0.91[ASN][1000 genomes]
rs13254484	0.93[ASN][1000 genomes]
rs13258311	0.80[ASN][1000 genomes]
rs13258847	0.87[ASN][1000 genomes]
rs13263422	0.90[ASN][1000 genomes]
rs13265563	0.92[ASN][1000 genomes]
rs13276258	0.93[ASN][1000 genomes]
rs13278474	0.95[ASN][1000 genomes]
rs13278500	0.90[ASN][1000 genomes]
rs13280148	0.90[ASN][1000 genomes]
rs13280954	0.91[ASN][1000 genomes]
rs13282023	0.90[ASN][1000 genomes]
rs1354343	0.90[ASN][1000 genomes]
rs1393974	0.87[ASN][1000 genomes]
rs1393975	0.89[ASN][1000 genomes]
rs1393976	0.93[CHB][hapmap];0.83[CHD][hapmap]
rs1393978	0.90[ASN][1000 genomes]
rs1393979	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1393980	0.90[ASN][1000 genomes]
rs1503563	0.93[ASN][1000 genomes]
rs1503564	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503565	0.98[ASN][1000 genomes]
rs1503567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17327114	0.95[ASN][1000 genomes]
rs2062825	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2062826	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2174174	0.99[ASN][1000 genomes]
rs2174175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2345577	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734906	0.94[ASN][1000 genomes]
rs7011923	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7818179	0.90[ASN][1000 genomes]
rs7818245	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7824921	0.98[ASN][1000 genomes]
rs7845798	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs950036	0.89[ASN][1000 genomes]
rs967084	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
2	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107216400-107219400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:107217800-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107218000-107219200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:107218000-107219200	Enhancers	Placenta	Placenta
7	chr8:107218000-107221600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:107218000-107221600	Enhancers	Osteobl	bone
9	chr8:107218200-107220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107218200-107220000	Enhancers	NHEK	skin
11	chr8:107218200-107221200	Enhancers	NHLF	lung
12	chr8:107218200-107221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:107218400-107219200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:107218400-107221200	Enhancers	NH-A	brain
15	chr8:107218600-107219200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:107218600-107219200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:107218600-107219200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:107218600-107219200	Flanking Active TSS	A549	lung
19	chr8:107218600-107221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:107218600-107222000	Enhancers	HUVEC	blood vessel
21	chr8:107218800-107219200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:107218800-107219200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:107218800-107219200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:107218800-107219200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:107218800-107219600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:107218800-107220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:107218800-107221400	Enhancers	HMEC	breast
28	chr8:107219000-107219200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:107219000-107219200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:107219000-107220200	Weak transcription	HSMM	muscle
31	chr8:107219000-107220400	Weak transcription	Aorta	Aorta
32	chr8:107219000-107220400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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