Variant report

Variant	rs13254484
Chromosome Location	chr8:107204364-107204365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151197106..151197679-chr8:107204284..107205213,2	MCF-7	breast:
2	chr8:107202671..107205667-chr8:107207577..107209109,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089745	0.92[ASN][1000 genomes]
rs10093257	1.00[ASN][1000 genomes]
rs10107505	0.87[ASN][1000 genomes]
rs1018144	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10955416	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs11776161	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11988559	0.93[ASN][1000 genomes]
rs11991394	0.85[ASN][1000 genomes]
rs11992727	0.95[ASN][1000 genomes]
rs11993758	0.98[ASN][1000 genomes]
rs11993836	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542585	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12544592	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12544655	0.92[ASN][1000 genomes]
rs12545291	0.92[ASN][1000 genomes]
rs12548002	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12550138	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13253589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258311	0.82[ASN][1000 genomes]
rs13258847	0.89[ASN][1000 genomes]
rs13263422	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13265563	0.85[ASN][1000 genomes]
rs13276258	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278474	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13278500	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13280148	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282023	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1354343	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393974	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1393975	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1393976	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1393978	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393979	0.92[ASN][1000 genomes]
rs1393980	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1503563	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503564	0.95[ASN][1000 genomes]
rs1503565	0.95[ASN][1000 genomes]
rs1503566	0.93[ASN][1000 genomes]
rs1503567	0.93[ASN][1000 genomes]
rs1566787	0.93[ASN][1000 genomes]
rs17327114	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2062825	0.89[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2062826	0.89[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2174174	0.92[ASN][1000 genomes]
rs2174175	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs2345577	0.98[ASN][1000 genomes]
rs4734906	0.87[ASN][1000 genomes]
rs7011923	0.95[ASN][1000 genomes]
rs7818179	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7818245	0.92[ASN][1000 genomes]
rs7824921	0.95[ASN][1000 genomes]
rs7845798	0.87[ASN][1000 genomes]
rs950036	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs967084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107199600-107204800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107203800-107204400	Enhancers	Placenta	Placenta
3	chr8:107203800-107205000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:107204200-107204600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:107204200-107214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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