Variant report

Variant	rs1503565
Chromosome Location	chr8:107210629-107210630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089745	0.87[ASN][1000 genomes]
rs10093257	0.95[ASN][1000 genomes]
rs10107505	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1018144	0.87[ASN][1000 genomes]
rs10955416	0.80[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11776161	0.92[ASN][1000 genomes]
rs11988559	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11991394	0.90[ASN][1000 genomes]
rs11992727	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993758	0.93[ASN][1000 genomes]
rs11993836	0.87[ASN][1000 genomes]
rs12542585	0.87[ASN][1000 genomes]
rs12544592	0.87[ASN][1000 genomes]
rs12544655	0.87[ASN][1000 genomes]
rs12545291	0.87[ASN][1000 genomes]
rs12548002	0.87[ASN][1000 genomes]
rs12550138	0.87[ASN][1000 genomes]
rs13253589	0.93[ASN][1000 genomes]
rs13254484	0.95[ASN][1000 genomes]
rs13258847	0.84[ASN][1000 genomes]
rs13263422	0.87[ASN][1000 genomes]
rs13265563	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13276258	0.95[ASN][1000 genomes]
rs13278474	0.93[ASN][1000 genomes]
rs13278500	0.92[ASN][1000 genomes]
rs13280148	0.87[ASN][1000 genomes]
rs13280954	0.93[ASN][1000 genomes]
rs13282023	0.87[ASN][1000 genomes]
rs1354343	0.92[ASN][1000 genomes]
rs1393974	0.89[ASN][1000 genomes]
rs1393975	0.91[ASN][1000 genomes]
rs1393976	0.93[CHB][hapmap];0.83[CHD][hapmap]
rs1393978	0.87[ASN][1000 genomes]
rs1393979	0.87[ASN][1000 genomes]
rs1393980	0.87[ASN][1000 genomes]
rs1503563	0.95[ASN][1000 genomes]
rs1503564	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503566	0.98[ASN][1000 genomes]
rs1503567	0.98[ASN][1000 genomes]
rs1566787	0.98[ASN][1000 genomes]
rs17327114	0.93[ASN][1000 genomes]
rs2062825	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2062826	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2174174	0.96[ASN][1000 genomes]
rs2174175	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2345577	0.93[ASN][1000 genomes]
rs4734906	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6998198	0.83[AMR][1000 genomes]
rs7011923	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818179	0.87[ASN][1000 genomes]
rs7818245	0.87[ASN][1000 genomes]
rs7824921	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845798	0.92[ASN][1000 genomes]
rs950036	0.91[ASN][1000 genomes]
rs967084	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107204200-107214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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