Variant report

Variant	rs13278474
Chromosome Location	chr8:107215474-107215475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089745	0.94[ASN][1000 genomes]
rs10093257	0.98[ASN][1000 genomes]
rs10107505	0.90[ASN][1000 genomes]
rs1018144	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955416	0.93[CHB][hapmap];0.88[CHD][hapmap];0.90[ASN][1000 genomes]
rs11776161	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11988559	0.91[ASN][1000 genomes]
rs11991394	0.87[ASN][1000 genomes]
rs11992727	0.93[ASN][1000 genomes]
rs11993758	0.95[ASN][1000 genomes]
rs11993836	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12542585	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12544592	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12544655	0.94[ASN][1000 genomes]
rs12545291	0.94[ASN][1000 genomes]
rs12548002	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550138	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13253589	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13254484	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258311	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13258847	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13263422	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13265563	0.87[ASN][1000 genomes]
rs13276258	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13278500	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13280148	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13280954	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13282023	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1354343	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1393974	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1393975	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1393976	0.93[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap]
rs1393978	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1393979	0.94[ASN][1000 genomes]
rs1393980	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503563	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503564	0.93[ASN][1000 genomes]
rs1503565	0.93[ASN][1000 genomes]
rs1503566	0.95[ASN][1000 genomes]
rs1503567	0.95[ASN][1000 genomes]
rs1566787	0.95[ASN][1000 genomes]
rs17327114	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062825	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062826	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2174174	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2174175	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2345577	0.95[ASN][1000 genomes]
rs4734906	0.90[ASN][1000 genomes]
rs7011923	0.93[ASN][1000 genomes]
rs7818179	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7818245	0.94[ASN][1000 genomes]
rs7824921	0.93[ASN][1000 genomes]
rs7845798	0.90[ASN][1000 genomes]
rs950036	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs967084	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107212600-107218000	Weak transcription	Osteobl	bone
3	chr8:107212600-107218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107213400-107218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:107214200-107215600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:107214200-107216000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:107214600-107215800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:107215000-107217000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:107215000-107218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:107215200-107222200	Enhancers	NHDF-Ad	bronchial
11	chr8:107215400-107222200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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