Variant report

Variant	rs1009404
Chromosome Location	chr6:113726604-113726605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10872098	0.85[ASN][1000 genomes]
rs11153416	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883171	0.83[ASN][1000 genomes]
rs2049923	0.85[ASN][1000 genomes]
rs2142639	0.85[ASN][1000 genomes]
rs2348293	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348294	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348295	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348302	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2881870	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945495	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945496	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568788	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568789	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568790	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568793	0.85[ASN][1000 genomes]
rs6903091	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903628	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908767	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915133	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915622	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6926220	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718459	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718460	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341217	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738052	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739755	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768104	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs909541	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285411	0.85[ASN][1000 genomes]
rs9320446	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320450	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320459	0.85[ASN][1000 genomes]
rs9374397	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374399	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374401	0.85[ASN][1000 genomes]
rs9387145	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400624	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481369	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113718200-113727400	Weak transcription	Left Ventricle	heart
2	chr6:113718800-113726800	Weak transcription	Fetal Lung	lung
3	chr6:113725200-113727800	Enhancers	Fetal Stomach	stomach
4	chr6:113725600-113726800	Enhancers	Fetal Kidney	kidney
5	chr6:113726000-113727800	Enhancers	Stomach Mucosa	stomach
6	chr6:113726200-113727400	Weak transcription	Esophagus	oesophagus
7	chr6:113726200-113728200	Enhancers	NHDF-Ad	bronchial
8	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:113726400-113726800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:113726400-113726800	Weak transcription	Ovary	ovary
11	chr6:113726400-113727600	Enhancers	Adipose Nuclei	Adipose
12	chr6:113726400-113728000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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