Variant report

Variant	rs2348293
Chromosome Location	chr6:113738779-113738780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009404	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872098	0.89[ASN][1000 genomes]
rs11153416	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883171	0.86[ASN][1000 genomes]
rs2049923	0.89[ASN][1000 genomes]
rs2142639	0.89[ASN][1000 genomes]
rs2348294	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348295	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348302	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881870	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945496	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568788	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568789	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568790	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568793	0.89[ASN][1000 genomes]
rs6903091	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903628	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908767	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915133	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915622	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926220	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718459	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718460	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341217	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7738052	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739755	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768104	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909541	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285411	0.89[ASN][1000 genomes]
rs9320446	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320459	0.89[ASN][1000 genomes]
rs9374397	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374399	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374401	0.89[ASN][1000 genomes]
rs9387145	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400624	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9481369	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113736000-113747200	Weak transcription	HMEC	breast
2	chr6:113737800-113739600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:113738400-113738800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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