Variant report

Variant	rs6903628
Chromosome Location	chr6:113768457-113768458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009404	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872098	0.89[ASN][1000 genomes]
rs11153416	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883171	0.86[ASN][1000 genomes]
rs2049923	0.89[ASN][1000 genomes]
rs2142639	0.89[ASN][1000 genomes]
rs2348293	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348295	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348302	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568788	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568793	0.89[ASN][1000 genomes]
rs6903091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908767	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915133	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915622	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926220	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718460	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341217	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7738052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739755	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768104	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909541	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285411	0.89[ASN][1000 genomes]
rs9320446	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320450	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320459	0.89[ASN][1000 genomes]
rs9374397	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374401	0.89[ASN][1000 genomes]
rs9387145	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400624	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9481369	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113763400-113769000	Weak transcription	Placenta	Placenta
2	chr6:113767800-113769200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:113767800-113769200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:113767800-113770000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:113767800-113771600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113767800-113772600	Enhancers	NHEK	skin
7	chr6:113768000-113771400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:113768000-113771600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:113768000-113771600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:113768000-113771600	Enhancers	NH-A	brain
11	chr6:113768000-113772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:113768000-113772200	Enhancers	NHDF-Ad	bronchial
13	chr6:113768000-113772200	Enhancers	NHLF	lung
14	chr6:113768200-113768800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:113768200-113769200	Enhancers	Hela-S3	cervix
16	chr6:113768200-113771600	Enhancers	HUVEC	blood vessel
17	chr6:113768200-113771600	Enhancers	Osteobl	bone
18	chr6:113768200-113772400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:113768400-113768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:113768400-113768800	Enhancers	A549	lung
21	chr6:113768400-113769000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:113768400-113769200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:113768400-113770400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:113768400-113772400	Enhancers	HMEC	breast

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