Variant report

Variant	rs6926220
Chromosome Location	chr6:113731241-113731242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009404	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872098	0.85[ASN][1000 genomes]
rs11153416	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883171	0.83[ASN][1000 genomes]
rs2049923	0.85[ASN][1000 genomes]
rs2142639	0.85[ASN][1000 genomes]
rs2348293	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348294	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348295	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2348302	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2881870	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945495	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945496	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568788	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568789	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568790	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568793	0.85[ASN][1000 genomes]
rs6903091	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903628	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915133	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915622	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs718459	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718460	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341217	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738052	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739755	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768104	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs909541	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285411	0.85[ASN][1000 genomes]
rs9320446	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320450	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320459	0.85[ASN][1000 genomes]
rs9374397	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374399	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374401	0.85[ASN][1000 genomes]
rs9387145	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400624	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481369	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113727600-113732400	Weak transcription	Ovary	ovary
3	chr6:113727800-113731400	Weak transcription	Stomach Mucosa	stomach
4	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
5	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:113728000-113732400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:113730600-113732800	Enhancers	NHDF-Ad	bronchial
8	chr6:113731000-113731600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:113731000-113731800	Enhancers	HSMM	muscle
10	chr6:113731000-113731800	Enhancers	Osteobl	bone
11	chr6:113731000-113732400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:113731000-113732400	Enhancers	NHLF	lung
13	chr6:113731000-113732800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:113731000-113732800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:113731000-113733000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:113731200-113732800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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