Variant report

Variant	rs6915622
Chromosome Location	chr6:113733232-113733233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113732055..113735601-chr6:114178607..114183451,4	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009404	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10872098	0.81[ASN][1000 genomes]
rs11153416	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1883171	0.84[ASN][1000 genomes]
rs2049923	0.81[ASN][1000 genomes]
rs2142639	0.81[ASN][1000 genomes]
rs2348293	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2348294	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2348295	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2348302	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2881870	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945495	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945496	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568788	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568789	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6568790	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568793	0.81[ASN][1000 genomes]
rs6903091	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903628	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908767	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6915133	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926220	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs718459	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs718460	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7341217	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738052	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7739755	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768104	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs909541	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285411	0.81[ASN][1000 genomes]
rs9320446	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9320450	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9320459	0.81[ASN][1000 genomes]
rs9374397	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374399	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374401	0.81[ASN][1000 genomes]
rs9387145	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9400624	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9481369	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
3	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:113731600-113735000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113731600-113736200	Enhancers	A549	lung
7	chr6:113731800-113733800	Weak transcription	Osteobl	bone
8	chr6:113731800-113734000	Weak transcription	Stomach Mucosa	stomach
9	chr6:113732400-113733800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:113732400-113734000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:113732400-113734000	Weak transcription	NHLF	lung
12	chr6:113732600-113733600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:113732600-113733800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:113732600-113733800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:113732600-113733800	Weak transcription	HSMM	muscle
16	chr6:113732600-113733800	Weak transcription	NHEK	skin
17	chr6:113732600-113735400	Weak transcription	HMEC	breast
18	chr6:113732800-113733400	Weak transcription	NHDF-Ad	bronchial
19	chr6:113732800-113733800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:113732800-113733800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:113732800-113733800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:113732800-113733800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:113732800-113734000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:113732800-113734000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:113732800-113734000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:113733000-113734000	Weak transcription	Monocytes-CD14+_RO01746	blood

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