Variant report

Variant	rs9387145
Chromosome Location	chr6:113780351-113780352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009404	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872098	0.89[ASN][1000 genomes]
rs11153416	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883171	0.86[ASN][1000 genomes]
rs2049923	0.89[ASN][1000 genomes]
rs2142639	0.89[ASN][1000 genomes]
rs2348293	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348294	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348295	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348302	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881870	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945495	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945496	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568788	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568789	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568790	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568793	0.89[ASN][1000 genomes]
rs6903091	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903628	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908767	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915133	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915622	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926220	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718459	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718460	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341217	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7738052	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739755	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768104	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909541	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285411	0.89[ASN][1000 genomes]
rs9320446	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320450	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320459	0.89[ASN][1000 genomes]
rs9374397	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374399	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374401	0.89[ASN][1000 genomes]
rs9400624	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9481369	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113772400-113785800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113777200-113785600	Weak transcription	A549	lung
4	chr6:113777800-113780600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:113778000-113780400	Enhancers	NH-A	brain
6	chr6:113778200-113782400	Weak transcription	NHEK	skin
7	chr6:113778400-113780400	Enhancers	Ovary	ovary
8	chr6:113779800-113780400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:113779800-113780400	Enhancers	HUVEC	blood vessel
10	chr6:113780000-113781800	Weak transcription	Placenta	Placenta
11	chr6:113780000-113781800	Weak transcription	NHDF-Ad	bronchial
12	chr6:113780000-113782000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:113780000-113782200	Weak transcription	Osteobl	bone
14	chr6:113780000-113782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:113780000-113785400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:113780000-113785400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:113780000-113785400	Weak transcription	NHLF	lung
18	chr6:113780200-113780400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:113780200-113782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:113780200-113782600	Weak transcription	Fetal Lung	lung
21	chr6:113780200-113785000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:113780200-113785400	Weak transcription	Muscle Satellite Cultured Cells	--

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