Variant report

Variant	rs10094247
Chromosome Location	chr8:91551759-91551760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91545718..91547242-chr8:91550025..91552385,2	MCF-7	breast:
2	chr8:91551402..91553580-chr8:91557141..91559345,2	MCF-7	breast:
3	chr8:91015944..91018143-chr8:91550446..91553140,2	K562	blood:
4	chr8:91532164..91534929-chr8:91551181..91553248,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046627	1.00[EUR][1000 genomes]
rs10046646	1.00[EUR][1000 genomes]
rs10046669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10086033	1.00[EUR][1000 genomes]
rs10102958	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10103105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10103492	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10107291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110208	1.00[EUR][1000 genomes]
rs10113814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504895	1.00[EUR][1000 genomes]
rs11995911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11996705	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16904875	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16904876	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17642418	1.00[EUR][1000 genomes]
rs17713849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17714516	1.00[EUR][1000 genomes]
rs17714893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28409887	0.86[EUR][1000 genomes]
rs28470383	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28497331	1.00[EUR][1000 genomes]
rs28501669	1.00[EUR][1000 genomes]
rs28635869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28703980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707372	1.00[EUR][1000 genomes]
rs28832707	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41428044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4570116	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5005584	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73697736	1.00[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91544800-91552400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:91546800-91552800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91547000-91552600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:91547000-91557400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:91549400-91553000	Weak transcription	HSMMtube	muscle
6	chr8:91549400-91553000	Weak transcription	NHDF-Ad	bronchial
7	chr8:91549400-91554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:91549400-91554800	Weak transcription	NHLF	lung
9	chr8:91549600-91552800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:91549600-91552800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:91549600-91552800	Weak transcription	Osteobl	bone
12	chr8:91549600-91553000	Weak transcription	NH-A	brain
13	chr8:91549600-91553600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:91549600-91553600	Weak transcription	Hela-S3	cervix
15	chr8:91549800-91553000	Weak transcription	HUVEC	blood vessel
16	chr8:91550000-91552400	Weak transcription	HSMM	muscle
17	chr8:91550000-91552600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:91550000-91552800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:91550000-91553000	Weak transcription	HMEC	breast
20	chr8:91550000-91553600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:91551200-91553000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:91551200-91555600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:91551400-91554800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links