Variant report

Variant	rs16904875
Chromosome Location	chr8:91580580-91580581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91579817..91581638-chr8:91582195..91584431,2	MCF-7	breast:
2	chr8:91012503..91016326-chr8:91580464..91585421,8	MCF-7	breast:
3	chr8:91579655..91581249-chr8:91589234..91591557,2	K562	blood:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046627	1.00[EUR][1000 genomes]
rs10046646	1.00[EUR][1000 genomes]
rs10046669	1.00[EUR][1000 genomes]
rs10086033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094247	1.00[EUR][1000 genomes]
rs10102958	0.86[EUR][1000 genomes]
rs10103105	1.00[EUR][1000 genomes]
rs10103492	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107291	1.00[EUR][1000 genomes]
rs10110208	1.00[EUR][1000 genomes]
rs10113814	1.00[EUR][1000 genomes]
rs10504895	1.00[EUR][1000 genomes]
rs11995911	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11996705	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16904876	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17642418	1.00[EUR][1000 genomes]
rs17713849	1.00[EUR][1000 genomes]
rs17714516	1.00[EUR][1000 genomes]
rs17714893	1.00[EUR][1000 genomes]
rs28409887	0.86[EUR][1000 genomes]
rs28470383	0.86[EUR][1000 genomes]
rs28497331	1.00[EUR][1000 genomes]
rs28501669	1.00[EUR][1000 genomes]
rs28635869	1.00[EUR][1000 genomes]
rs28703980	1.00[EUR][1000 genomes]
rs28707372	1.00[EUR][1000 genomes]
rs28832707	0.86[EUR][1000 genomes]
rs41428044	1.00[EUR][1000 genomes]
rs4570116	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5005584	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73697736	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91571000-91584600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91573800-91581000	Weak transcription	Hela-S3	cervix
3	chr8:91576800-91580600	Weak transcription	NHEK	skin
4	chr8:91580200-91581200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:91580200-91581400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:91580200-91582400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:91580400-91580800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:91580400-91580800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:91580400-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:91580400-91581800	Enhancers	HMEC	breast
11	chr8:91580400-91588200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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