Variant report

Variant	rs28635869
Chromosome Location	chr8:91533524-91533525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91530400..91534566-chr8:91534971..91538885,4	MCF-7	breast:
2	chr8:91532246..91535757-chr8:91536085..91540118,3	MCF-7	breast:
3	chr8:91532164..91534929-chr8:91551181..91553248,2	MCF-7	breast:
4	chr8:91532071..91534513-chr8:91543640..91546018,2	MCF-7	breast:
5	chr8:91526432..91528878-chr8:91531076..91533715,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046627	1.00[EUR][1000 genomes]
rs10046646	1.00[EUR][1000 genomes]
rs10046669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10086033	1.00[EUR][1000 genomes]
rs10094247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102958	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10103105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10103492	1.00[EUR][1000 genomes]
rs10107291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110208	1.00[EUR][1000 genomes]
rs10113814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504895	1.00[EUR][1000 genomes]
rs11995911	1.00[EUR][1000 genomes]
rs11996705	1.00[EUR][1000 genomes]
rs16904875	1.00[EUR][1000 genomes]
rs16904876	1.00[EUR][1000 genomes]
rs17642418	1.00[EUR][1000 genomes]
rs17713849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17714516	1.00[EUR][1000 genomes]
rs17714893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28409887	0.86[EUR][1000 genomes]
rs28470383	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28497331	1.00[EUR][1000 genomes]
rs28501669	1.00[EUR][1000 genomes]
rs28703980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707372	1.00[EUR][1000 genomes]
rs28832707	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41428044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4570116	1.00[EUR][1000 genomes]
rs5005584	1.00[EUR][1000 genomes]
rs73697736	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981885	chr8:91528144-91537088	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91531400-91533600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91531800-91533800	Enhancers	HSMM	muscle
3	chr8:91532000-91533800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:91532000-91533800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:91532000-91533800	Enhancers	NHDF-Ad	bronchial
6	chr8:91532400-91533600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91532400-91533600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr8:91532600-91533600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:91532600-91533800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:91532600-91533800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:91532600-91533800	Enhancers	HMEC	breast
12	chr8:91532800-91533800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:91532800-91533800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:91532800-91533800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:91532800-91533800	Enhancers	NHEK	skin
16	chr8:91532800-91534600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:91533000-91533600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:91533000-91533800	Flanking Active TSS	HSMMtube	muscle
19	chr8:91533200-91533800	Enhancers	NH-A	brain
20	chr8:91533200-91533800	Enhancers	Osteobl	bone
21	chr8:91533400-91533600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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