Variant report

Variant	rs5005584
Chromosome Location	chr8:91581622-91581623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91579817..91581638-chr8:91582195..91584431,2	MCF-7	breast:
2	chr8:90996350..90998104-chr8:91581429..91583990,2	K562	blood:
3	chr8:91581416..91584042-chr8:91589576..91591168,2	K562	blood:
4	chr8:91012503..91016326-chr8:91580464..91585421,8	MCF-7	breast:
5	chr8:91013689..91014427-chr8:91580931..91581653,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046627	1.00[EUR][1000 genomes]
rs10046646	1.00[EUR][1000 genomes]
rs10046669	1.00[EUR][1000 genomes]
rs10086033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094247	1.00[EUR][1000 genomes]
rs10102958	0.86[EUR][1000 genomes]
rs10103105	1.00[EUR][1000 genomes]
rs10103492	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107291	1.00[EUR][1000 genomes]
rs10110208	1.00[EUR][1000 genomes]
rs10113814	1.00[EUR][1000 genomes]
rs10504895	1.00[EUR][1000 genomes]
rs11995911	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11996705	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16904875	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16904876	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17642418	1.00[EUR][1000 genomes]
rs17713849	1.00[EUR][1000 genomes]
rs17714516	1.00[EUR][1000 genomes]
rs17714893	1.00[EUR][1000 genomes]
rs28409887	0.86[EUR][1000 genomes]
rs28470383	0.86[EUR][1000 genomes]
rs28497331	1.00[EUR][1000 genomes]
rs28501669	1.00[EUR][1000 genomes]
rs28635869	1.00[EUR][1000 genomes]
rs28703980	1.00[EUR][1000 genomes]
rs28707372	1.00[EUR][1000 genomes]
rs28832707	0.86[EUR][1000 genomes]
rs41428044	1.00[EUR][1000 genomes]
rs4570116	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73697736	1.00[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91571000-91584600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91580200-91582400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:91580400-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:91580400-91581800	Enhancers	HMEC	breast
5	chr8:91580400-91588200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:91580600-91581800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91580600-91581800	Enhancers	NHEK	skin
8	chr8:91580600-91586000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:91580600-91587000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:91580800-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:91580800-91582800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:91581000-91581800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:91581000-91581800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:91581000-91581800	Enhancers	Osteobl	bone
15	chr8:91581200-91581800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:91581200-91581800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:91581200-91581800	Enhancers	NH-A	brain
18	chr8:91581200-91582000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr8:91581200-91582000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:91581200-91583400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:91581200-91583800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:91581400-91584600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:91581400-91585200	Weak transcription	Fetal Heart	heart
24	chr8:91581600-91582600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:91581600-91586600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links