Variant report

Variant	rs10098450
Chromosome Location	chr8:50966524-50966525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085950	1.00[AMR][1000 genomes]
rs10100515	0.85[AMR][1000 genomes]
rs10107442	0.85[AMR][1000 genomes]
rs10113626	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914099	0.85[AMR][1000 genomes]
rs16914125	0.85[AMR][1000 genomes]
rs16914130	0.85[AMR][1000 genomes]
rs16914213	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16914302	0.85[AMR][1000 genomes]
rs16914414	0.85[AMR][1000 genomes]
rs28418948	0.85[AMR][1000 genomes]
rs28468445	0.85[AMR][1000 genomes]
rs56234780	0.85[AMR][1000 genomes]
rs59814912	0.85[AMR][1000 genomes]
rs61279830	0.85[AMR][1000 genomes]
rs6990200	0.82[YRI][hapmap]
rs73569349	0.85[AMR][1000 genomes]
rs73569350	0.85[AMR][1000 genomes]
rs73569361	0.85[AMR][1000 genomes]
rs73569366	0.85[AMR][1000 genomes]
rs73569372	0.85[AMR][1000 genomes]
rs73569374	0.85[AMR][1000 genomes]
rs73569385	0.85[AMR][1000 genomes]
rs73677826	0.85[AMR][1000 genomes]
rs73677828	0.85[AMR][1000 genomes]
rs7822276	0.85[AMR][1000 genomes]
rs7837650	0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7837667	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757272	chr8:50873293-50968942	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50952800-50969800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:50965400-50969600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:50966000-50967200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:50966000-50967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:50966200-50966600	Enhancers	NHDF-Ad	bronchial
6	chr8:50966400-50966800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:50966400-50968600	Enhancers	Hela-S3	cervix

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