Variant report
Variant | rs7822276 |
---|---|
Chromosome Location | chr8:50877406-50877407 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085950 | 0.85[AMR][1000 genomes] |
rs10096911 | 0.83[AMR][1000 genomes] |
rs10097416 | 0.83[AMR][1000 genomes] |
rs10098450 | 0.85[AMR][1000 genomes] |
rs10100515 | 1.00[AMR][1000 genomes] |
rs10107442 | 1.00[AMR][1000 genomes] |
rs10109132 | 0.83[AMR][1000 genomes] |
rs10113626 | 0.85[AMR][1000 genomes] |
rs16914099 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16914125 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16914130 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16914414 | 1.00[AMR][1000 genomes] |
rs16914433 | 0.85[AMR][1000 genomes] |
rs28418948 | 1.00[AMR][1000 genomes] |
rs28438566 | 0.85[AMR][1000 genomes] |
rs28468445 | 1.00[AMR][1000 genomes] |
rs28524672 | 0.83[AMR][1000 genomes] |
rs28552506 | 0.83[AMR][1000 genomes] |
rs28553511 | 0.85[AMR][1000 genomes] |
rs28557047 | 0.85[AMR][1000 genomes] |
rs28566866 | 0.83[AMR][1000 genomes] |
rs28664922 | 0.85[AMR][1000 genomes] |
rs28676677 | 0.83[AMR][1000 genomes] |
rs56234780 | 1.00[AMR][1000 genomes] |
rs58638825 | 0.85[AMR][1000 genomes] |
rs59814912 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60600453 | 0.83[AMR][1000 genomes] |
rs61279830 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6990200 | 0.85[AMR][1000 genomes] |
rs73569349 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569350 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569361 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569366 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569370 | 0.83[AMR][1000 genomes] |
rs73569372 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569374 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73569385 | 1.00[AMR][1000 genomes] |
rs73573511 | 0.83[AMR][1000 genomes] |
rs73573585 | 0.85[AMR][1000 genomes] |
rs73575345 | 0.83[AMR][1000 genomes] |
rs73676211 | 0.83[AMR][1000 genomes] |
rs73677826 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73677828 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73677829 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1022115 | chr8:50864995-50981944 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv611311 | chr8:50865230-50980320 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | esv34788 | chr8:50873247-50965438 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv3479183 | chr8:50873277-50965062 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv1033098 | chr8:50873293-50965692 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv2757272 | chr8:50873293-50968942 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | esv2759613 | chr8:50873293-51137995 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | esv3479184 | chr8:50873317-50965027 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | esv3479185 | chr8:50873317-50965027 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | esv3692982 | chr8:50875494-50959622 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:50875800-50882800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
2 | chr8:50876000-50878400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
3 | chr8:50876000-50889200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |