Variant report

Variant	rs10107442
Chromosome Location	chr8:51012771-51012772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10085950	0.85[AMR][1000 genomes]
rs10096911	0.83[AMR][1000 genomes]
rs10097416	0.83[AMR][1000 genomes]
rs10098450	0.85[AMR][1000 genomes]
rs10100515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109132	0.83[AMR][1000 genomes]
rs10113626	0.85[AMR][1000 genomes]
rs16914099	1.00[AMR][1000 genomes]
rs16914125	1.00[AMR][1000 genomes]
rs16914130	1.00[AMR][1000 genomes]
rs16914414	1.00[AMR][1000 genomes]
rs16914433	0.85[AMR][1000 genomes]
rs28418948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28438566	0.85[AMR][1000 genomes]
rs28468445	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524672	0.83[AMR][1000 genomes]
rs28552506	0.83[AMR][1000 genomes]
rs28553511	0.85[AMR][1000 genomes]
rs28557047	0.85[AMR][1000 genomes]
rs28566866	0.83[AMR][1000 genomes]
rs28664922	0.85[AMR][1000 genomes]
rs28676677	0.83[AMR][1000 genomes]
rs28784070	0.85[AMR][1000 genomes]
rs56234780	1.00[AMR][1000 genomes]
rs58638825	0.85[AMR][1000 genomes]
rs59313993	0.85[AMR][1000 genomes]
rs59814912	1.00[AMR][1000 genomes]
rs60600453	0.83[AMR][1000 genomes]
rs61279830	1.00[AMR][1000 genomes]
rs6990200	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73569349	1.00[AMR][1000 genomes]
rs73569350	1.00[AMR][1000 genomes]
rs73569361	1.00[AMR][1000 genomes]
rs73569366	1.00[AMR][1000 genomes]
rs73569370	0.83[AMR][1000 genomes]
rs73569372	1.00[AMR][1000 genomes]
rs73569374	1.00[AMR][1000 genomes]
rs73569385	1.00[AMR][1000 genomes]
rs73573511	0.83[AMR][1000 genomes]
rs73573585	0.85[AMR][1000 genomes]
rs73575345	0.83[AMR][1000 genomes]
rs73575352	0.83[AMR][1000 genomes]
rs73575355	0.85[AMR][1000 genomes]
rs73577267	0.85[AMR][1000 genomes]
rs73577275	0.85[AMR][1000 genomes]
rs73676211	0.83[AMR][1000 genomes]
rs73677826	1.00[AMR][1000 genomes]
rs73677828	1.00[AMR][1000 genomes]
rs73677829	0.83[AMR][1000 genomes]
rs7822276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034538	chr8:50998331-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv539605	chr8:50998331-51032943	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1029139	chr8:51003318-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51003400-51017400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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