Variant report

Variant	rs73575355
Chromosome Location	chr8:51101294-51101295
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10100515	0.85[AMR][1000 genomes]
rs10107442	0.85[AMR][1000 genomes]
rs16914125	0.85[AMR][1000 genomes]
rs16914130	0.85[AMR][1000 genomes]
rs16914414	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16914433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418948	0.85[AMR][1000 genomes]
rs28438566	1.00[AMR][1000 genomes]
rs28468445	0.85[AMR][1000 genomes]
rs28553511	1.00[AMR][1000 genomes]
rs28557047	1.00[AMR][1000 genomes]
rs28664922	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28784070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56234780	0.85[AMR][1000 genomes]
rs61279830	0.85[AMR][1000 genomes]
rs73569361	0.85[AMR][1000 genomes]
rs73569366	0.85[AMR][1000 genomes]
rs73569372	0.85[AMR][1000 genomes]
rs73569374	0.85[AMR][1000 genomes]
rs73569385	0.85[AMR][1000 genomes]
rs73573585	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51100200-51102200	Enhancers	HMEC	breast
2	chr8:51100400-51102400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:51100600-51102200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:51100800-51102000	Enhancers	NH-A	brain
5	chr8:51100800-51102200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:51100800-51102200	Enhancers	Osteobl	bone
7	chr8:51101000-51101400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:51101000-51101400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:51101000-51101800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:51101000-51102000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:51101000-51102400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:51101000-51104200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:51101200-51101400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:51101200-51101600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:51101200-51101600	Enhancers	Hela-S3	cervix
16	chr8:51101200-51102000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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