Variant report
Variant | rs56234780 |
---|---|
Chromosome Location | chr8:50972217-50972218 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085950 | 0.85[AMR][1000 genomes] |
rs10096911 | 0.83[AMR][1000 genomes] |
rs10097416 | 0.83[AMR][1000 genomes] |
rs10098450 | 0.85[AMR][1000 genomes] |
rs10100515 | 1.00[AMR][1000 genomes] |
rs10107442 | 1.00[AMR][1000 genomes] |
rs10109132 | 0.83[AMR][1000 genomes] |
rs10113626 | 0.85[AMR][1000 genomes] |
rs16914099 | 1.00[AMR][1000 genomes] |
rs16914125 | 1.00[AMR][1000 genomes] |
rs16914130 | 1.00[AMR][1000 genomes] |
rs16914414 | 1.00[AMR][1000 genomes] |
rs16914433 | 0.85[AMR][1000 genomes] |
rs28418948 | 1.00[AMR][1000 genomes] |
rs28438566 | 0.85[AMR][1000 genomes] |
rs28468445 | 1.00[AMR][1000 genomes] |
rs28524672 | 0.83[AMR][1000 genomes] |
rs28552506 | 0.83[AMR][1000 genomes] |
rs28553511 | 0.85[AMR][1000 genomes] |
rs28557047 | 0.85[AMR][1000 genomes] |
rs28566866 | 0.83[AMR][1000 genomes] |
rs28664922 | 0.85[AMR][1000 genomes] |
rs28676677 | 0.83[AMR][1000 genomes] |
rs28784070 | 0.85[AMR][1000 genomes] |
rs58638825 | 0.85[AMR][1000 genomes] |
rs59313993 | 0.85[AMR][1000 genomes] |
rs59814912 | 1.00[AMR][1000 genomes] |
rs60600453 | 0.83[AMR][1000 genomes] |
rs61279830 | 1.00[AMR][1000 genomes] |
rs6990200 | 0.85[AMR][1000 genomes] |
rs73569349 | 1.00[AMR][1000 genomes] |
rs73569350 | 1.00[AMR][1000 genomes] |
rs73569361 | 1.00[AMR][1000 genomes] |
rs73569366 | 1.00[AMR][1000 genomes] |
rs73569370 | 0.83[AMR][1000 genomes] |
rs73569372 | 1.00[AMR][1000 genomes] |
rs73569374 | 1.00[AMR][1000 genomes] |
rs73569385 | 1.00[AMR][1000 genomes] |
rs73573511 | 0.83[AMR][1000 genomes] |
rs73573585 | 0.85[AMR][1000 genomes] |
rs73575345 | 0.83[AMR][1000 genomes] |
rs73575352 | 0.83[AMR][1000 genomes] |
rs73575355 | 0.85[AMR][1000 genomes] |
rs73577267 | 0.85[AMR][1000 genomes] |
rs73577275 | 0.85[AMR][1000 genomes] |
rs73676211 | 0.83[AMR][1000 genomes] |
rs73677826 | 1.00[AMR][1000 genomes] |
rs73677828 | 1.00[AMR][1000 genomes] |
rs73677829 | 0.83[AMR][1000 genomes] |
rs7822276 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1022115 | chr8:50864995-50981944 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv611311 | chr8:50865230-50980320 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | esv2759613 | chr8:50873293-51137995 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | esv2758621 | chr8:50886593-51137995 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv611312 | chr8:50930075-51011122 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv890871 | chr8:50936174-51040022 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv890872 | chr8:50946702-51032813 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:50969800-50973200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |