Variant report

Variant	rs28552506
Chromosome Location	chr8:51042935-51042936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10096911	1.00[AMR][1000 genomes]
rs10097416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100515	0.83[AMR][1000 genomes]
rs10107442	0.83[AMR][1000 genomes]
rs10109132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914099	0.83[AMR][1000 genomes]
rs16914125	0.83[AMR][1000 genomes]
rs16914130	0.83[AMR][1000 genomes]
rs16914302	0.83[AMR][1000 genomes]
rs16914414	0.83[AMR][1000 genomes]
rs28418948	0.83[AMR][1000 genomes]
rs28468445	0.83[AMR][1000 genomes]
rs28524672	1.00[AMR][1000 genomes]
rs28566866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676677	1.00[AMR][1000 genomes]
rs56234780	0.83[AMR][1000 genomes]
rs59814912	0.83[AMR][1000 genomes]
rs60600453	1.00[AMR][1000 genomes]
rs61279830	0.83[AMR][1000 genomes]
rs73569349	0.83[AMR][1000 genomes]
rs73569350	0.83[AMR][1000 genomes]
rs73569361	0.83[AMR][1000 genomes]
rs73569366	0.83[AMR][1000 genomes]
rs73569370	1.00[AMR][1000 genomes]
rs73569372	0.83[AMR][1000 genomes]
rs73569374	0.83[AMR][1000 genomes]
rs73569385	0.83[AMR][1000 genomes]
rs73573511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575345	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575352	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677826	0.83[AMR][1000 genomes]
rs73677828	0.83[AMR][1000 genomes]
rs73677829	1.00[AMR][1000 genomes]
rs7822276	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv26	chr8:51027781-51044881	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1027998	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv539607	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51032200-51046600	Weak transcription	Fetal Brain Male	brain
2	chr8:51037800-51046800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:51038000-51047600	Weak transcription	Right Atrium	heart
4	chr8:51040600-51048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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