Variant report

Variant	rs73569370
Chromosome Location	chr8:50893334-50893335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10096911	1.00[AMR][1000 genomes]
rs10097416	1.00[AMR][1000 genomes]
rs10100515	0.83[AMR][1000 genomes]
rs10107442	0.83[AMR][1000 genomes]
rs10109132	1.00[AMR][1000 genomes]
rs16914099	0.83[AMR][1000 genomes]
rs16914125	0.83[AMR][1000 genomes]
rs16914130	0.83[AMR][1000 genomes]
rs16914302	0.83[AMR][1000 genomes]
rs16914414	0.83[AMR][1000 genomes]
rs28418948	0.83[AMR][1000 genomes]
rs28468445	0.83[AMR][1000 genomes]
rs28524672	1.00[AMR][1000 genomes]
rs28552506	1.00[AMR][1000 genomes]
rs28566866	1.00[AMR][1000 genomes]
rs28676677	1.00[AMR][1000 genomes]
rs56234780	0.83[AMR][1000 genomes]
rs57882761	0.82[AFR][1000 genomes]
rs59814912	0.83[AMR][1000 genomes]
rs60600453	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279830	0.83[AMR][1000 genomes]
rs73569305	0.82[AFR][1000 genomes]
rs73569306	0.82[AFR][1000 genomes]
rs73569333	0.82[AFR][1000 genomes]
rs73569338	0.82[AFR][1000 genomes]
rs73569339	0.82[AFR][1000 genomes]
rs73569343	0.82[AFR][1000 genomes]
rs73569349	0.83[AMR][1000 genomes]
rs73569350	0.83[AMR][1000 genomes]
rs73569361	0.83[AMR][1000 genomes]
rs73569366	0.83[AMR][1000 genomes]
rs73569372	0.83[AMR][1000 genomes]
rs73569374	0.83[AMR][1000 genomes]
rs73569385	0.83[AMR][1000 genomes]
rs73573511	1.00[AMR][1000 genomes]
rs73575345	1.00[AMR][1000 genomes]
rs73575352	1.00[AMR][1000 genomes]
rs73584773	0.82[AFR][1000 genomes]
rs73676082	0.82[AFR][1000 genomes]
rs73676211	1.00[AMR][1000 genomes]
rs73677826	0.83[AMR][1000 genomes]
rs73677828	0.83[AMR][1000 genomes]
rs73677829	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7822276	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv34788	chr8:50873247-50965438	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3479183	chr8:50873277-50965062	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1033098	chr8:50873293-50965692	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757272	chr8:50873293-50968942	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3479184	chr8:50873317-50965027	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3479185	chr8:50873317-50965027	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3692982	chr8:50875494-50959622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1023258	chr8:50877934-50964286	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv818624	chr8:50882830-50945075	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50890200-50893600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:50892000-50894000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:50892800-50894000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:50892800-50894000	Enhancers	Fetal Intestine Large	intestine
5	chr8:50893000-50893600	Weak transcription	Fetal Intestine Small	intestine
6	chr8:50893000-50894000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:50893000-50894000	Enhancers	Brain Germinal Matrix	brain
8	chr8:50893200-50893600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr8:50893200-50894200	Enhancers	Liver	Liver

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