Variant report

Variant	rs28784070
Chromosome Location	chr8:51107391-51107392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10100515	0.85[AMR][1000 genomes]
rs10107442	0.85[AMR][1000 genomes]
rs16914125	0.85[AMR][1000 genomes]
rs16914130	0.85[AMR][1000 genomes]
rs16914414	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16914433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418948	0.85[AMR][1000 genomes]
rs28438566	1.00[AMR][1000 genomes]
rs28468445	0.85[AMR][1000 genomes]
rs28553511	1.00[AMR][1000 genomes]
rs28557047	1.00[AMR][1000 genomes]
rs28664922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56234780	0.85[AMR][1000 genomes]
rs61279830	0.85[AMR][1000 genomes]
rs73569366	0.85[AMR][1000 genomes]
rs73569372	0.85[AMR][1000 genomes]
rs73569374	0.85[AMR][1000 genomes]
rs73569385	0.85[AMR][1000 genomes]
rs73573585	1.00[AMR][1000 genomes]
rs73575355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51102400-51112400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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