Variant report

Variant	rs10102161
Chromosome Location	chr8:38864694-38864695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38864002..38868323-chr8:38871441..38875404,3	K562	blood:
2	chr8:38863652..38865668-chr8:38878061..38880403,2	K562	blood:
3	chr8:38862655..38865286-chr8:38875062..38877246,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000207199	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10095517	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10100675	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10104287	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10958534	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10958814	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11986341	0.81[EUR][1000 genomes]
rs13250555	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17846551	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34017677	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35245993	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35355873	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4313121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633028	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4733895	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733896	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733898	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733902	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733903	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733960	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733963	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474521	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474522	0.81[AMR][1000 genomes]
rs6474523	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474524	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474526	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6474527	0.92[ASN][1000 genomes]
rs6474528	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6474529	0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6989615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990299	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7003738	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7013359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7829041	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7833611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836006	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840293	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840746	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844848	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298649	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643905	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
2	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:38856800-38865600	Weak transcription	Dnd41	blood
4	chr8:38856800-38866600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:38856800-38866600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:38856800-38869400	Weak transcription	Liver	Liver
8	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
9	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
10	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
11	chr8:38857400-38865600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:38857600-38866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:38857600-38869200	Weak transcription	Brain Angular Gyrus	brain
15	chr8:38857600-38872200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:38857800-38865000	Enhancers	HepG2	liver
17	chr8:38857800-38865600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:38857800-38865800	Weak transcription	Fetal Intestine Large	intestine
19	chr8:38858000-38874200	Weak transcription	Fetal Brain Male	brain
20	chr8:38858000-38874400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:38858200-38867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:38858200-38867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:38858200-38875200	Weak transcription	Esophagus	oesophagus
24	chr8:38859000-38864800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:38859000-38865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:38859000-38866600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr8:38860200-38864800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:38860600-38869400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:38860600-38875000	Weak transcription	Gastric	stomach
30	chr8:38860800-38865000	Enhancers	Fetal Heart	heart
31	chr8:38861000-38864800	Weak transcription	Primary B cells from cord blood	blood
32	chr8:38861800-38865400	Enhancers	Fetal Lung	lung
33	chr8:38862000-38865200	Enhancers	HUVEC	blood vessel
34	chr8:38862200-38865600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:38862400-38866600	Weak transcription	Lung	lung
36	chr8:38862400-38871000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:38862600-38884400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:38862800-38864800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:38862800-38865000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:38862800-38865200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:38862800-38865600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:38862800-38865600	Weak transcription	Fetal Stomach	stomach
43	chr8:38862800-38865800	Weak transcription	HSMMtube	muscle
44	chr8:38862800-38866400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:38862800-38866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:38862800-38869400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr8:38862800-38869400	Weak transcription	Pancreas	Pancrea
48	chr8:38862800-38873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr8:38862800-38878200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr8:38863000-38865000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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