Variant report

Variant	rs4733969
Chromosome Location	chr8:38888951-38888952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38854112..38856391-chr8:38888365..38892463,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169490	Chromatin interaction
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10095517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10100675	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10102161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104287	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10958533	0.83[GIH][hapmap];0.90[JPT][hapmap]
rs10958534	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10958814	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986341	0.86[CEU][hapmap];0.83[TSI][hapmap]
rs13250555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17846551	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34017677	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35245993	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35355873	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4313121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633028	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733895	0.81[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733896	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733898	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733903	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733960	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733963	0.81[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733965	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474522	0.81[AMR][1000 genomes]
rs6474523	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474526	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474527	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.92[ASN][1000 genomes]
rs6474528	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474529	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6989615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990299	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6995969	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7003738	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7013359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7829041	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7833611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840293	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840746	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844848	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298649	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643905	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4733969	ADAM32	cis	cerebellum	SCAN
rs4733969	ADAM32	cis	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
3	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:38865600-38889000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:38872600-38889600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:38872600-38889800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:38875400-38889400	Weak transcription	Esophagus	oesophagus
10	chr8:38875400-38890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
12	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
13	chr8:38882400-38889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:38882800-38895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:38882800-38895000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:38883000-38889600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:38883000-38889600	Weak transcription	Lung	lung
18	chr8:38883000-38895000	Weak transcription	Spleen	Spleen
19	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:38883200-38889800	Weak transcription	Fetal Intestine Small	intestine
21	chr8:38883600-38889800	Weak transcription	Right Ventricle	heart
22	chr8:38885000-38895400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:38885000-38895400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:38885000-38896400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:38885000-38899400	Weak transcription	Liver	Liver
26	chr8:38885200-38895200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:38885200-38895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
29	chr8:38885400-38889000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:38885400-38889600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
33	chr8:38885800-38889000	Genic enhancers	Fetal Lung	lung
34	chr8:38885800-38889400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:38885800-38889600	Weak transcription	Fetal Stomach	stomach
36	chr8:38885800-38889600	Weak transcription	Left Ventricle	heart
37	chr8:38885800-38895200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:38885800-38911200	Weak transcription	Ovary	ovary
39	chr8:38886000-38889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:38886000-38894200	Weak transcription	HSMMtube	muscle
41	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
42	chr8:38886400-38889400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:38886400-38889600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr8:38886400-38890000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr8:38886400-38890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr8:38886400-38895000	Weak transcription	Adipose Nuclei	Adipose
47	chr8:38886400-38895000	Weak transcription	Small Intestine	intestine
48	chr8:38886400-38895200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:38886600-38895200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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