Variant report

Variant	rs7840746
Chromosome Location	chr8:38837534-38837535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38837076..38838935-chr8:38841015..38842870,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10095517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10100675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102161	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10104287	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958533	0.90[JPT][hapmap]
rs10958534	0.89[ASN][1000 genomes]
rs10958814	0.89[ASN][1000 genomes]
rs11986341	0.93[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs13250555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17846551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34017677	0.89[ASN][1000 genomes]
rs35245993	0.80[ASN][1000 genomes]
rs35355873	0.89[ASN][1000 genomes]
rs4313121	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4367507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4576396	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4633028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4733895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733896	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733898	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733902	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733903	0.95[ASN][1000 genomes]
rs4733960	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733965	0.86[CEU][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733967	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733968	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733969	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6474523	0.89[ASN][1000 genomes]
rs6474524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6474526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6474527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6474528	0.82[ASN][1000 genomes]
rs6474529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6989615	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6990299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[ASN][1000 genomes]
rs6995969	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs7003738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs7013359	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7829041	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7833611	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840293	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844848	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846203	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9298649	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643905	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7840746	ADAM32	cis	cerebellum	SCAN
rs7840746	ADAM32	cis	parietal	SCAN
rs7840746	POLB	cis	cerebellum	SCAN
rs7840746	ANK1	cis	cerebellum	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38824000-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:38824200-38847800	Weak transcription	Brain Substantia Nigra	brain
3	chr8:38824200-38848400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:38824200-38848800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:38827800-38847600	Weak transcription	Small Intestine	intestine
6	chr8:38828000-38847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:38828000-38848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:38828400-38848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:38828800-38839400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:38828800-38848400	Weak transcription	HSMMtube	muscle
11	chr8:38829000-38838800	Weak transcription	Left Ventricle	heart
12	chr8:38829000-38847600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:38829000-38847600	Weak transcription	Hela-S3	cervix
14	chr8:38829000-38847800	Weak transcription	Aorta	Aorta
15	chr8:38829000-38847800	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:38829000-38848400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:38830000-38847800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:38831400-38839600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:38831600-38848200	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:38831800-38839800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:38831800-38847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:38831800-38848400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:38832000-38847800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:38832000-38848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:38832000-38848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:38832000-38848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:38832200-38847800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:38832200-38848400	Weak transcription	Ovary	ovary
29	chr8:38832400-38839800	Weak transcription	Fetal Heart	heart
30	chr8:38832400-38845800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:38832400-38846600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:38832400-38846800	Weak transcription	Lung	lung
33	chr8:38832400-38847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:38832400-38847800	Weak transcription	Brain Anterior Caudate	brain
35	chr8:38832400-38847800	Weak transcription	HMEC	breast
36	chr8:38832400-38848000	Weak transcription	Adipose Nuclei	Adipose
37	chr8:38832400-38848400	Weak transcription	Right Ventricle	heart
38	chr8:38832400-38848800	Weak transcription	Pancreas	Pancrea
39	chr8:38832600-38844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:38832600-38846400	Weak transcription	Dnd41	blood
41	chr8:38832600-38847600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:38832600-38848600	Weak transcription	Esophagus	oesophagus
43	chr8:38832600-38848800	Weak transcription	Gastric	stomach
44	chr8:38832600-38848800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:38832600-38853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:38832800-38839600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr8:38832800-38846600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr8:38832800-38847600	Weak transcription	Placenta	Placenta
49	chr8:38833000-38843800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr8:38833000-38844200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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