Variant report

Variant	rs4733968
Chromosome Location	chr8:38885301-38885302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10095517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10100675	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10102161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104287	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10958533	0.90[JPT][hapmap]
rs10958534	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10958814	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986341	0.86[CEU][hapmap]
rs13250555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17846551	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34017677	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35245993	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35355873	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4313121	1.00[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633028	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733895	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733896	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733898	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733903	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733960	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733963	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733965	0.93[CEU][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474522	0.81[AMR][1000 genomes]
rs6474523	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474526	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[ASN][1000 genomes]
rs6474528	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474529	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6989615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6995969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7003738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7013359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7829041	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7833611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836006	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840293	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840746	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844848	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298649	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
3	chr8:38865000-38887200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:38865000-38889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:38865200-38887400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:38865400-38886000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:38865400-38887800	Strong transcription	HSMM	muscle
8	chr8:38865400-38888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:38865600-38888200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:38865600-38889000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:38866000-38888400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:38869800-38888400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:38870000-38886400	Weak transcription	Pancreas	Pancrea
15	chr8:38872000-38886200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:38872400-38888200	Strong transcription	Fetal Intestine Large	intestine
18	chr8:38872600-38889600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:38872600-38889800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr8:38872800-38888000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:38874200-38886400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr8:38874400-38888800	Strong transcription	Hela-S3	cervix
23	chr8:38875000-38888400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:38875200-38885600	Weak transcription	Fetal Heart	heart
25	chr8:38875200-38888800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr8:38875400-38886200	Weak transcription	Right Atrium	heart
27	chr8:38875400-38886600	Weak transcription	Gastric	stomach
28	chr8:38875400-38886800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:38875400-38889400	Weak transcription	Esophagus	oesophagus
30	chr8:38875400-38890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
32	chr8:38876400-38888000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:38876600-38888000	Strong transcription	Placenta	Placenta
34	chr8:38877000-38885600	Weak transcription	Stomach Mucosa	stomach
35	chr8:38877400-38885800	Strong transcription	Fetal Lung	lung
36	chr8:38877400-38887400	Strong transcription	Fetal Muscle Leg	muscle
37	chr8:38878400-38886800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:38878600-38885800	Strong transcription	Fetal Stomach	stomach
39	chr8:38878600-38886000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:38878600-38888600	Strong transcription	Dnd41	blood
41	chr8:38878800-38886800	Strong transcription	HepG2	liver
42	chr8:38879000-38885800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr8:38879000-38886800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr8:38879000-38887200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr8:38879000-38888000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr8:38879000-38888400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr8:38879200-38887000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:38879200-38887200	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr8:38879200-38887800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:38879200-38888000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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