Variant report

Variant	rs9298649
Chromosome Location	chr8:38858278-38858279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr8:38858275-38859269	A549	lung:	n/a	chr8:38858422-38858431
2	CHD1	chr8:38852795-38859264	IMR90	lung:	n/a	chr8:38854280-38854290 chr8:38854954-38854964
3	GATA2	chr8:38856987-38859131	HUVEC	blood vessel:	n/a	n/a
4	GATA3	chr8:38858274-38859446	A549	lung:	n/a	n/a
5	POLR2A	chr8:38857757-38859185	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr8:38858214-38859158	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr8:38857932-38859139	HUVEC	blood vessel:	n/a	n/a
8	SP1	chr8:38856339-38859288	A549	lung:	n/a	n/a
9	CEBPB	chr8:38856258-38858383	HCT-116	colon:	n/a	chr8:38857269-38857281
10	EP300	chr8:38858278-38859315	A549	lung:	n/a	chr8:38858419-38858433 chr8:38858859-38858869
11	POLR2A	chr8:38854896-38859164	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr8:38855026-38859169	HUVEC	blood vessel:	n/a	n/a
13	TCF12	chr8:38853459-38859347	A549	lung:	n/a	chr8:38853682-38853690 chr8:38854813-38854820
14	SETDB1	chr8:38857774-38858366	U2OS	brain:	n/a	n/a
15	SIX5	chr8:38858245-38859131	A549	lung:	n/a	n/a
16	REST	chr8:38858263-38859230	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:38856826..38859687-chr8:38879245..38881053,2	MCF-7	breast:
2	chr8:38849585..38851368-chr8:38856687..38858833,2	MCF-7	breast:
3	chr8:38853560..38856920-chr8:38856982..38859048,5	K562	blood:
4	chr8:38839827..38841978-chr8:38857481..38860325,2	K562	blood:

Variant related genes	Relation type
TM2D2	TF binding region
ENSG00000169490	Chromatin interaction
ENSG00000168615	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10095517	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10100675	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10102161	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10104287	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10958534	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10958814	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11986341	0.80[EUR][1000 genomes]
rs13250555	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17846551	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34017677	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35245993	0.83[AMR][1000 genomes]
rs35355873	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4313121	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4367507	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4576396	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4633028	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4733895	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733896	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733898	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733902	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733903	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733960	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733963	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733965	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733967	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733968	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4733969	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474521	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6474523	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6474524	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6474526	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474527	0.85[ASN][1000 genomes]
rs6474528	0.83[AMR][1000 genomes]
rs6474529	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6989615	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6990299	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7003738	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7013359	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7829041	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7833611	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7836006	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7840293	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840746	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7844848	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7846203	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643905	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38855200-38864600	Weak transcription	Spleen	Spleen
2	chr8:38855800-38881600	Weak transcription	Fetal Kidney	kidney
3	chr8:38856600-38860400	Weak transcription	Gastric	stomach
4	chr8:38856600-38861800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:38856600-38889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:38856800-38858600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:38856800-38859000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:38856800-38859400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:38856800-38859600	Weak transcription	Primary B cells from cord blood	blood
10	chr8:38856800-38860200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr8:38856800-38862000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:38856800-38862200	Weak transcription	Aorta	Aorta
13	chr8:38856800-38862400	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:38856800-38865600	Weak transcription	Dnd41	blood
15	chr8:38856800-38866600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:38856800-38866600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:38856800-38869400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:38856800-38869400	Weak transcription	Liver	Liver
19	chr8:38856800-38874400	Weak transcription	Brain Anterior Caudate	brain
20	chr8:38856800-38889600	Weak transcription	Colonic Mucosa	Colon
21	chr8:38857000-38858400	Flanking Active TSS	Osteobl	bone
22	chr8:38857000-38858800	Enhancers	Fetal Heart	heart
23	chr8:38857000-38859000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr8:38857200-38858400	Enhancers	Placenta	Placenta
25	chr8:38857200-38858800	Enhancers	Small Intestine	intestine
26	chr8:38857200-38859000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr8:38857200-38859200	Enhancers	Colon Smooth Muscle	Colon
28	chr8:38857200-38859200	Enhancers	Stomach Mucosa	stomach
29	chr8:38857200-38859800	Flanking Active TSS	HUVEC	blood vessel
30	chr8:38857200-38881400	Weak transcription	Fetal Brain Female	brain
31	chr8:38857400-38858600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:38857400-38858600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:38857400-38858600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:38857400-38859200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr8:38857400-38859200	Enhancers	Fetal Lung	lung
36	chr8:38857400-38861000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:38857400-38865600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr8:38857400-38872400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:38857600-38858400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:38857600-38858400	Enhancers	Pancreas	Pancrea
41	chr8:38857600-38858400	Transcr. at gene 5' and 3'	NH-A	brain
42	chr8:38857600-38858800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:38857600-38858800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr8:38857600-38858800	Enhancers	K562	blood
45	chr8:38857600-38859000	Enhancers	HMEC	breast
46	chr8:38857600-38859200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:38857600-38859600	Enhancers	GM12878-XiMat	blood
48	chr8:38857600-38860200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:38857600-38861600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:38857600-38861600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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