Variant report

Variant	rs7013359
Chromosome Location	chr8:38890189-38890190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:38854112..38856391-chr8:38888365..38892463,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168615	Chromatin interaction
ENSG00000169490	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10095517	0.93[AMR][1000 genomes]
rs10100675	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10102161	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10104287	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10958534	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10958814	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13250555	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17846551	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34017677	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35245993	0.89[AMR][1000 genomes]
rs35355873	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4313121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4367507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4576396	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4633028	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4733895	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733896	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733898	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733903	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733960	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733963	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733965	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4733969	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474521	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474522	0.81[AMR][1000 genomes]
rs6474523	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474524	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6474526	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6474527	0.82[ASN][1000 genomes]
rs6474528	0.89[AMR][1000 genomes]
rs6474529	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6989615	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990299	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7003738	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7829041	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7833611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7836006	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840293	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840746	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7844848	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7846203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298649	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643905	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38872000-38890400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:38875400-38890200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:38875800-38895400	Weak transcription	Brain Angular Gyrus	brain
5	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
6	chr8:38882800-38895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:38882800-38895000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:38883000-38895000	Weak transcription	Spleen	Spleen
9	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr8:38885000-38895400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:38885000-38895400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:38885000-38896400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:38885000-38899400	Weak transcription	Liver	Liver
14	chr8:38885200-38895200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:38885200-38895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
17	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
19	chr8:38885800-38895200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:38885800-38911200	Weak transcription	Ovary	ovary
21	chr8:38886000-38894200	Weak transcription	HSMMtube	muscle
22	chr8:38886000-38899400	Weak transcription	Brain Substantia Nigra	brain
23	chr8:38886400-38890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:38886400-38895000	Weak transcription	Adipose Nuclei	Adipose
25	chr8:38886400-38895000	Weak transcription	Small Intestine	intestine
26	chr8:38886400-38895200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr8:38886600-38895200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:38887000-38895200	Weak transcription	Brain Anterior Caudate	brain
30	chr8:38887200-38895000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:38887400-38895200	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
33	chr8:38887800-38890400	Weak transcription	HSMM	muscle
34	chr8:38887800-38890600	Enhancers	HepG2	liver
35	chr8:38887800-38895400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:38887800-38895400	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:38888000-38890600	Enhancers	Fetal Heart	heart
38	chr8:38888000-38891600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:38888000-38891600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:38888000-38895000	Weak transcription	Placenta	Placenta
41	chr8:38888000-38895400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:38888000-38895600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr8:38888000-38899600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:38888200-38890400	Enhancers	Stomach Mucosa	stomach
45	chr8:38888200-38895200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:38888200-38897000	Weak transcription	Fetal Intestine Large	intestine
47	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
48	chr8:38888400-38890200	Enhancers	NHLF	lung
49	chr8:38888400-38890400	Enhancers	HUVEC	blood vessel
50	chr8:38888400-38893800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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