Variant report

Variant	rs10105293
Chromosome Location	chr8:59798998-59798999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10088494	0.90[EUR][1000 genomes]
rs10092649	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1463141	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs1463142	0.81[CEU][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap];0.87[EUR][1000 genomes]
rs17230460	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17231390	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17296353	0.84[CHD][hapmap]
rs17296500	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28578150	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28651644	0.84[EUR][1000 genomes]
rs4737529	0.84[EUR][1000 genomes]
rs4738738	0.85[CEU][hapmap];0.96[GIH][hapmap];0.88[MKK][hapmap];0.87[EUR][1000 genomes]
rs62505154	0.88[EUR][1000 genomes]
rs721011	0.85[CEU][hapmap];0.96[GIH][hapmap];0.88[MKK][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
4	chr8:59782200-59800200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:59788200-59803400	Weak transcription	Gastric	stomach
6	chr8:59790600-59804000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:59790800-59800400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
10	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
11	chr8:59794800-59800200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59794800-59804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:59795000-59805600	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:59795400-59800200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:59795400-59800400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:59795600-59799400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:59795600-59801800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:59795600-59803400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:59796400-59799000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:59796400-59799200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:59797200-59801800	Weak transcription	NHDF-Ad	bronchial
23	chr8:59797400-59800600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:59798000-59801000	Strong transcription	Dnd41	blood
25	chr8:59798200-59799000	Strong transcription	Fetal Thymus	thymus
26	chr8:59798600-59799000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:59798600-59799000	Enhancers	HSMM	muscle
28	chr8:59798600-59799000	Enhancers	Osteobl	bone
29	chr8:59798600-59799200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59798600-59802000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:59798800-59800400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr8:59798800-59800400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:59798800-59803200	Weak transcription	Placenta Amnion	Placenta Amnion

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