Variant report

Variant	rs1463141
Chromosome Location	chr8:59837654-59837655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10092649	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs10105293	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs12156223	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1463142	0.96[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230460	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs17231390	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17296500	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28578150	0.91[EUR][1000 genomes]
rs28600229	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28651644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28692477	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737529	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738738	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs721011	0.92[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
6	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:59827200-59839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:59827200-59840000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:59831200-59860200	Weak transcription	Gastric	stomach
18	chr8:59832200-59839400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:59834000-59840000	Weak transcription	Fetal Intestine Small	intestine
20	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:59835200-59841000	Strong transcription	Primary T cells from cord blood	blood
23	chr8:59835400-59841000	Strong transcription	Fetal Thymus	thymus
24	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:59836000-59840000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59836600-59838600	Weak transcription	Thymus	Thymus
27	chr8:59836600-59840000	Weak transcription	Dnd41	blood
28	chr8:59837000-59837800	Enhancers	HUVEC	blood vessel
29	chr8:59837000-59837800	Enhancers	Osteobl	bone
30	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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