Variant report

Variant	rs28692477
Chromosome Location	chr8:59871875-59871876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10088494	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12156223	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1463141	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1463142	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17230460	0.80[EUR][1000 genomes]
rs17231390	0.80[EUR][1000 genomes]
rs17296500	0.80[EUR][1000 genomes]
rs28600229	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28651644	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4737529	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738738	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62505154	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs721011	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
9	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:59867400-59872000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:59868000-59872000	Weak transcription	Small Intestine	intestine
12	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
13	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
15	chr8:59869200-59872800	Strong transcription	Fetal Thymus	thymus
16	chr8:59869400-59872400	Enhancers	Fetal Brain Male	brain
17	chr8:59869400-59874000	Enhancers	NHDF-Ad	bronchial
18	chr8:59869800-59873800	Enhancers	Fetal Lung	lung
19	chr8:59869800-59876800	Weak transcription	Gastric	stomach
20	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:59870400-59872000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:59870400-59873800	Enhancers	Brain Germinal Matrix	brain
23	chr8:59870600-59872600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:59870800-59872200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:59870800-59872800	Enhancers	Fetal Stomach	stomach
26	chr8:59871000-59872000	Weak transcription	Fetal Brain Female	brain
27	chr8:59871000-59872600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:59871200-59872400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:59871200-59872400	Enhancers	Rectal Smooth Muscle	rectum
30	chr8:59871200-59872800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr8:59871200-59872800	Enhancers	Stomach Mucosa	stomach
32	chr8:59871200-59873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:59871400-59877200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:59871600-59872400	Weak transcription	Osteobl	bone
35	chr8:59871600-59873200	Weak transcription	Fetal Heart	heart
36	chr8:59871600-59875000	Weak transcription	Dnd41	blood
37	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:59871600-59878000	Weak transcription	HSMM	muscle
39	chr8:59871800-59872200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr8:59871800-59872400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:59871800-59872400	Enhancers	Colon Smooth Muscle	Colon
42	chr8:59871800-59872800	Enhancers	Pancreas	Pancrea
43	chr8:59871800-59872800	Enhancers	Stomach Smooth Muscle	stomach
44	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:59871800-59878600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links