Variant report

Variant	rs721011
Chromosome Location	chr8:59842502-59842503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59838431..59840418-chr8:59841097..59843754,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088494	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10092649	0.80[CEU][hapmap]
rs10105293	0.85[CEU][hapmap];0.96[GIH][hapmap];0.88[MKK][hapmap];0.87[EUR][1000 genomes]
rs12156223	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1463141	0.92[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463142	1.00[ASW][hapmap];0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924364	0.82[CHD][hapmap]
rs17230460	0.88[CEU][hapmap];0.96[GIH][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17231390	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17296500	0.88[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28578150	0.90[EUR][1000 genomes]
rs28600229	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28651644	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28692477	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737529	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738738	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505154	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:59831200-59860200	Weak transcription	Gastric	stomach
11	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
16	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
17	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
18	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:59840000-59854000	Strong transcription	Dnd41	blood
21	chr8:59840200-59845200	Weak transcription	Osteobl	bone
22	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:59840400-59844200	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
28	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:59841000-59842800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:59841000-59843000	Weak transcription	Primary T cells from cord blood	blood
31	chr8:59841000-59843000	Weak transcription	Fetal Thymus	thymus
32	chr8:59841000-59845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:59841000-59848200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:59841000-59848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:59841000-59848800	Weak transcription	Thymus	Thymus
36	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
38	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum

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