Variant report

Variant	rs28600229
Chromosome Location	chr8:59869405-59869406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10088494	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12156223	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1463141	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1463142	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28651644	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28692477	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737529	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738738	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62505154	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs721011	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59858200-59870400	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
12	chr8:59859200-59870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:59860400-59871200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:59861200-59870800	Weak transcription	Fetal Stomach	stomach
15	chr8:59864600-59870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:59865000-59871200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:59865400-59871800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:59866200-59869800	Weak transcription	Fetal Lung	lung
19	chr8:59866200-59871000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:59866400-59869600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:59866400-59869600	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:59866400-59870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:59866400-59871200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:59866800-59869800	Weak transcription	Osteobl	bone
25	chr8:59866800-59870600	Weak transcription	Fetal Brain Female	brain
26	chr8:59867200-59871200	Weak transcription	Pancreas	Pancrea
27	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:59867400-59872000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:59867600-59870600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:59868000-59869800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:59868000-59872000	Weak transcription	Small Intestine	intestine
32	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
33	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:59868200-59871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
36	chr8:59869000-59871200	Weak transcription	Stomach Mucosa	stomach
37	chr8:59869200-59872800	Strong transcription	Fetal Thymus	thymus
38	chr8:59869400-59869800	Enhancers	Gastric	stomach
39	chr8:59869400-59871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:59869400-59871600	Strong transcription	Dnd41	blood
41	chr8:59869400-59871800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:59869400-59872400	Enhancers	Fetal Brain Male	brain
43	chr8:59869400-59874000	Enhancers	NHDF-Ad	bronchial

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