Variant report

Variant	rs62505154
Chromosome Location	chr8:59826818-59826819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092649	0.81[EUR][1000 genomes]
rs10105293	0.88[EUR][1000 genomes]
rs12156223	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1463141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1463142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17230460	0.93[EUR][1000 genomes]
rs17231390	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17296500	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28578150	0.92[EUR][1000 genomes]
rs28600229	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28651644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28692477	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4737529	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738738	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs721011	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
6	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:59821400-59833400	Weak transcription	Dnd41	blood
12	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood
13	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:59824200-59827200	Strong transcription	Fetal Thymus	thymus
16	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59826400-59827000	Genic enhancers	Thymus	Thymus
19	chr8:59826600-59827000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr8:59826600-59827000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr8:59826600-59827000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr8:59826600-59827000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:59826600-59827000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:59826600-59827200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr8:59826600-59827200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:59826600-59827200	Enhancers	NHEK	skin
27	chr8:59826800-59827000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:59826800-59827000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr8:59826800-59827200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr8:59826800-59827200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr8:59826800-59827200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr8:59826800-59827200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:59826800-59827400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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