Variant report

Variant	rs10088494
Chromosome Location	chr8:59822473-59822474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092649	0.83[EUR][1000 genomes]
rs10105293	0.90[EUR][1000 genomes]
rs12156223	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1463141	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1463142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17230460	0.95[EUR][1000 genomes]
rs17231390	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17296500	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28578150	0.93[EUR][1000 genomes]
rs28600229	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28651644	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28692477	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4737529	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738738	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62505154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721011	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
4	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:59816000-59823600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:59816000-59825800	Weak transcription	Fetal Kidney	kidney
10	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:59816200-59823400	Weak transcription	Osteobl	bone
12	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
13	chr8:59816400-59823600	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:59817400-59822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:59818800-59826400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:59819600-59823200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:59819800-59823200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:59821400-59833400	Weak transcription	Dnd41	blood
24	chr8:59821800-59824200	Weak transcription	Fetal Thymus	thymus
25	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links