Variant report

Variant	rs17231390
Chromosome Location	chr8:59815328-59815329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10088494	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10091451	0.82[JPT][hapmap]
rs10092649	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10105293	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10156249	0.90[CHB][hapmap]
rs12156223	0.83[EUR][1000 genomes]
rs1463141	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1463142	0.84[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16924364	0.90[CHB][hapmap]
rs17230460	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17296500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28578150	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28651644	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28692477	0.80[EUR][1000 genomes]
rs4737529	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4738738	0.89[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62505154	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs721011	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
4	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
7	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:59811800-59815400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:59811800-59815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:59811800-59815600	Weak transcription	HUVEC	blood vessel
12	chr8:59811800-59815600	Weak transcription	NHDF-Ad	bronchial
13	chr8:59811800-59816800	Weak transcription	Fetal Thymus	thymus
14	chr8:59811800-59817000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
17	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:59812800-59815600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:59813600-59817400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:59814000-59815800	Enhancers	Brain Hippocampus Middle	brain
22	chr8:59814000-59816400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:59814600-59815400	Weak transcription	Fetal Brain Female	brain
24	chr8:59814800-59816800	Enhancers	Fetal Brain Male	brain
25	chr8:59815000-59815400	Weak transcription	Brain Germinal Matrix	brain
26	chr8:59815000-59815600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr8:59815000-59816400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:59815000-59820800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:59815200-59815800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:59815200-59816200	Enhancers	Fetal Heart	heart
31	chr8:59815200-59816200	Enhancers	Fetal Lung	lung
32	chr8:59815200-59816200	Enhancers	Osteobl	bone
33	chr8:59815200-59817400	Weak transcription	Dnd41	blood

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