Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10123606	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10513222	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10513223	0.89[CEU][hapmap]
rs10817532	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982007	0.90[CEU][hapmap]
rs1330169	0.90[CEU][hapmap]
rs2183364	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2418259	0.89[CEU][hapmap]
rs2900568	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2900569	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35189176	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4979295	0.85[CEU][hapmap]
rs4979296	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4979297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979298	0.89[CEU][hapmap]
rs7026176	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7029830	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7038501	0.85[CEU][hapmap]
rs7047895	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7852787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853127	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7855811	0.82[CEU][hapmap]
rs882980	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs944180	0.90[CEU][hapmap]
rs9942975	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:116675800-116686000	Weak transcription	Colonic Mucosa	Colon
4	chr9:116675800-116691800	Weak transcription	Lung	lung
5	chr9:116676200-116688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:116679200-116689600	Weak transcription	HSMM	muscle
7	chr9:116679400-116686800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
9	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:116684200-116688000	Weak transcription	HUVEC	blood vessel
11	chr9:116684400-116686200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:116684800-116686000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:116684800-116690800	Weak transcription	Osteobl	bone
15	chr9:116685200-116687000	Weak transcription	Liver	Liver
16	chr9:116685600-116686000	ZNF genes & repeats	Fetal Kidney	kidney

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