Variant report

Variant	rs101271
Chromosome Location	chr5:154436799-154436800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10057198	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1603404	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs166989	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2453756	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs286601	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs286619	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap]
rs286626	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286630	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286631	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs287117	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs287118	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs287121	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs287123	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs287124	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28775325	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs412109	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs445362	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580126	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs664586	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs101271	MFAP3	cis	cerebellum	SCAN
rs101271	TIMD4	cis	cerebellum	SCAN
rs101271	MFAP3	cis	parietal	SCAN
rs101271	HAVCR1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154432400-154437200	Weak transcription	Left Ventricle	heart
2	chr5:154433400-154437200	Weak transcription	Right Ventricle	heart
3	chr5:154436000-154438000	Enhancers	Fetal Heart	heart
4	chr5:154436200-154437400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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