Variant report

Variant	rs287118
Chromosome Location	chr5:154431419-154431420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10057198	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs101271	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs166989	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286626	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286630	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286631	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287117	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs287121	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287123	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287124	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28775325	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs412109	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445362	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs664586	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154426600-154433000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:154428600-154432200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:154429600-154432200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:154429600-154433000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:154429800-154432200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:154429800-154432200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:154429800-154432600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:154430000-154432400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:154430000-154433200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:154430400-154432000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:154430400-154432200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:154430400-154432200	Weak transcription	Fetal Heart	heart
13	chr5:154430400-154432600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:154430600-154432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:154430600-154432400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:154430800-154432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links