Variant report

Variant	rs166989
Chromosome Location	chr5:154437688-154437689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10057198	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs101271	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286626	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286630	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286631	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287117	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs287118	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287121	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287123	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287124	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28775325	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs412109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445362	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs664586	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154436000-154438000	Enhancers	Fetal Heart	heart
2	chr5:154437200-154438000	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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