Variant report

Variant	rs287117
Chromosome Location	chr5:154437734-154437735
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs101271	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1603404	0.81[CEU][hapmap]
rs166989	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2453756	0.81[CEU][hapmap]
rs286601	0.81[CEU][hapmap]
rs286626	0.93[AFR][1000 genomes]
rs287118	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs351290	0.84[ASN][1000 genomes]
rs351291	0.84[ASN][1000 genomes]
rs412109	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs445362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580126	0.81[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154436000-154438000	Enhancers	Fetal Heart	heart
2	chr5:154437200-154438000	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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