Variant report

Variant	rs412109
Chromosome Location	chr5:154434822-154434823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10057198	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs101271	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1603404	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs166989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453756	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs286601	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs286619	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs286626	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286630	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286631	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287117	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs287118	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287121	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287123	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287124	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28775325	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs445362	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580126	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs664586	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154432000-154435000	Enhancers	HepG2	liver
2	chr5:154432200-154435600	Enhancers	Fetal Heart	heart
3	chr5:154432400-154437200	Weak transcription	Left Ventricle	heart
4	chr5:154433400-154436200	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:154433400-154437200	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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