Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10057198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs101271	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1603404	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs166989	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2431154	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2431156	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2453756	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs286620	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs286630	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286631	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287117	0.93[AFR][1000 genomes]
rs287118	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287121	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287123	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287124	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28775325	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs412109	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs445362	0.93[AFR][1000 genomes]
rs664586	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7443026	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3374550	chr5:154403808-154421409	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3410951	chr5:154403808-154427370	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154416000-154416800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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