Variant report

Variant	rs10144581
Chromosome Location	chr14:55337104-55337105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55336799..55338659-chr14:55514913..55516718,2	MCF-7	breast:
2	chr14:55329931..55332245-chr14:55336217..55337731,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10132356	1.00[AMR][1000 genomes]
rs10133661	1.00[AMR][1000 genomes]
rs10134429	1.00[AMR][1000 genomes]
rs10134647	1.00[AMR][1000 genomes]
rs10137504	1.00[AMR][1000 genomes]
rs10137881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144972	0.81[AFR][1000 genomes]
rs10145816	1.00[AMR][1000 genomes]
rs10149080	1.00[AMR][1000 genomes]
rs10149945	1.00[AMR][1000 genomes]
rs10150556	1.00[AMR][1000 genomes]
rs10150825	0.81[AFR][1000 genomes]
rs10151500	0.81[AFR][1000 genomes]
rs10220342	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844799	1.00[AMR][1000 genomes]
rs17128033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2183083	1.00[AFR][1000 genomes]
rs28491418	1.00[AMR][1000 genomes]
rs28643468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662314	1.00[AMR][1000 genomes]
rs28706216	1.00[AMR][1000 genomes]
rs28719471	1.00[AMR][1000 genomes]
rs9323273	1.00[AMR][1000 genomes]
rs9323274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55305200-55337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:55325000-55337200	Weak transcription	Adipose Nuclei	Adipose
3	chr14:55327000-55338200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:55329400-55347800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:55329600-55337200	Weak transcription	Stomach Mucosa	stomach
6	chr14:55330800-55337200	Weak transcription	Aorta	Aorta
7	chr14:55330800-55347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:55331600-55337200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:55331800-55344800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:55331800-55347600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:55332800-55338000	Weak transcription	Small Intestine	intestine
12	chr14:55333200-55343800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:55334000-55346200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:55334200-55337200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:55334400-55337200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:55334800-55337200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:55336400-55337200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr14:55336400-55337600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr14:55336400-55338400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr14:55336600-55337200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:55336600-55337400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:55336600-55337400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr14:55336600-55337400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr14:55336600-55337600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:55336600-55337600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:55336600-55338000	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr14:55336800-55337600	Active TSS	Hela-S3	cervix
28	chr14:55336800-55337800	Weak transcription	Liver	Liver
29	chr14:55336800-55338000	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr14:55336800-55338000	Active TSS	Duodenum Mucosa	Duodenum
31	chr14:55337000-55337200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:55337000-55337200	Flanking Active TSS	HepG2	liver
33	chr14:55337000-55337400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:55337000-55337400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:55337000-55337400	Active TSS	Brain Substantia Nigra	brain
36	chr14:55337000-55337400	Flanking Active TSS	Fetal Stomach	stomach
37	chr14:55337000-55337600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr14:55337000-55337600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:55337000-55337600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:55337000-55337600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:55337000-55337600	Active TSS	Muscle Satellite Cultured Cells	--
42	chr14:55337000-55337600	Active TSS	Placenta	Placenta
43	chr14:55337000-55337600	Active TSS	Lung	lung
44	chr14:55337000-55337600	Active TSS	Psoas Muscle	Psoas
45	chr14:55337000-55337600	Active TSS	A549	lung
46	chr14:55337000-55337600	Active TSS	Dnd41	blood
47	chr14:55337000-55337600	Active TSS	HMEC	breast
48	chr14:55337000-55337600	Active TSS	HSMM	muscle
49	chr14:55337000-55337600	Active TSS	K562	blood
50	chr14:55337000-55337600	Active TSS	NH-A	brain

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