Variant report
| Variant | rs28491418 |
|---|---|
| Chromosome Location | chr14:55381428-55381429 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131979 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10132356 | 1.00[AMR][1000 genomes] |
| rs10133661 | 1.00[AMR][1000 genomes] |
| rs10134429 | 1.00[AMR][1000 genomes] |
| rs10134647 | 1.00[AMR][1000 genomes] |
| rs10137504 | 1.00[AMR][1000 genomes] |
| rs10137881 | 1.00[AMR][1000 genomes] |
| rs10141456 | 0.91[AFR][1000 genomes] |
| rs10144581 | 1.00[AMR][1000 genomes] |
| rs10145816 | 1.00[AMR][1000 genomes] |
| rs10149080 | 1.00[AMR][1000 genomes] |
| rs10149945 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10150556 | 1.00[AMR][1000 genomes] |
| rs10220342 | 1.00[AMR][1000 genomes] |
| rs11844799 | 1.00[AMR][1000 genomes] |
| rs12323345 | 0.95[AFR][1000 genomes] |
| rs17128033 | 1.00[AMR][1000 genomes] |
| rs28413055 | 0.81[AFR][1000 genomes] |
| rs28643468 | 1.00[AMR][1000 genomes] |
| rs28662314 | 1.00[AMR][1000 genomes] |
| rs28706216 | 1.00[AMR][1000 genomes] |
| rs28719471 | 1.00[AMR][1000 genomes] |
| rs9323273 | 1.00[AMR][1000 genomes] |
| rs9323274 | 1.00[AMR][1000 genomes] |
| rs9972204 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530042 | chr14:55208170-55386966 | Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv932970 | chr14:55326559-55532749 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:55370600-55388600 | Weak transcription | HepG2 | liver |
