Variant report

Variant	rs9323274
Chromosome Location	chr14:55455107-55455108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130198	0.86[AFR][1000 genomes]
rs10132356	1.00[AMR][1000 genomes]
rs10133661	1.00[AMR][1000 genomes]
rs10134429	0.94[LWK][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs10134647	1.00[AMR][1000 genomes]
rs10137504	1.00[AMR][1000 genomes]
rs10137881	1.00[AMR][1000 genomes]
rs10142619	0.86[AFR][1000 genomes]
rs10144581	1.00[AMR][1000 genomes]
rs10145816	1.00[AMR][1000 genomes]
rs10149080	1.00[AMR][1000 genomes]
rs10149945	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs10150556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220342	1.00[AMR][1000 genomes]
rs11844799	1.00[AMR][1000 genomes]
rs17128033	0.84[LWK][hapmap];1.00[AMR][1000 genomes]
rs28406982	0.87[AFR][1000 genomes]
rs28489712	0.80[ASW][hapmap];0.94[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs28491418	1.00[AMR][1000 genomes]
rs28513529	1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[AFR][1000 genomes]
rs28643468	1.00[AMR][1000 genomes]
rs28662314	1.00[AMR][1000 genomes]
rs28706216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28719471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55411000-55477000	Weak transcription	Left Ventricle	heart
2	chr14:55418600-55492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:55419800-55480400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:55420000-55471600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:55421800-55481400	Weak transcription	Placenta	Placenta
6	chr14:55421800-55492800	Weak transcription	Aorta	Aorta
7	chr14:55422400-55492400	Weak transcription	Fetal Kidney	kidney
8	chr14:55424200-55476800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:55427200-55477400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:55428400-55457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:55428400-55463000	Weak transcription	Esophagus	oesophagus
12	chr14:55428400-55471200	Weak transcription	Brain Germinal Matrix	brain
13	chr14:55428400-55471400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:55429000-55492400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:55429400-55457400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:55429600-55479000	Weak transcription	Fetal Brain Female	brain
17	chr14:55429800-55466600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:55430400-55484000	Weak transcription	Lung	lung
19	chr14:55434000-55492800	Weak transcription	Primary B cells from cord blood	blood
20	chr14:55434200-55486800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:55437600-55483600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:55438600-55490200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:55439400-55460000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:55439400-55485600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:55439400-55490200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:55439800-55479400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:55440200-55464400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:55441400-55460400	Strong transcription	Dnd41	blood
29	chr14:55442200-55492800	Weak transcription	Fetal Intestine Large	intestine
30	chr14:55442600-55480600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr14:55443200-55471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:55443200-55481200	Weak transcription	Pancreas	Pancrea
33	chr14:55443400-55465000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:55443400-55492200	Weak transcription	NHLF	lung
35	chr14:55443800-55457400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:55443800-55465800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:55444000-55457400	Weak transcription	NH-A	brain
38	chr14:55444000-55457600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr14:55444000-55471800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:55444200-55480200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:55444400-55455600	Weak transcription	HUVEC	blood vessel
42	chr14:55444400-55457400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:55445000-55459600	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr14:55445000-55459600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:55445000-55460400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:55445200-55456000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr14:55445400-55458600	Weak transcription	Fetal Stomach	stomach
48	chr14:55446000-55471400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:55447400-55455600	Weak transcription	Fetal Lung	lung
50	chr14:55447400-55457200	Weak transcription	A549	lung

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