Variant report

Variant	rs10220342
Chromosome Location	chr14:55342036-55342037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10132356	1.00[AMR][1000 genomes]
rs10133661	1.00[AMR][1000 genomes]
rs10134429	1.00[AMR][1000 genomes]
rs10134647	1.00[AMR][1000 genomes]
rs10137504	1.00[AMR][1000 genomes]
rs10137881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144581	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145816	1.00[AMR][1000 genomes]
rs10149080	1.00[AMR][1000 genomes]
rs10149945	1.00[AMR][1000 genomes]
rs10150556	1.00[AMR][1000 genomes]
rs11844799	1.00[AMR][1000 genomes]
rs17128033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2183083	0.84[AFR][1000 genomes]
rs28491418	1.00[AMR][1000 genomes]
rs28643468	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662314	1.00[AMR][1000 genomes]
rs28706216	1.00[AMR][1000 genomes]
rs28719471	1.00[AMR][1000 genomes]
rs9323273	1.00[AMR][1000 genomes]
rs9323274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55329400-55347800	Weak transcription	Primary B cells from cord blood	blood
2	chr14:55330800-55347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:55331800-55344800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:55331800-55347600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:55333200-55343800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:55334000-55346200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:55337000-55343600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:55337200-55345000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:55337400-55346000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:55337400-55346200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:55337400-55347800	Weak transcription	HSMMtube	muscle
12	chr14:55337600-55346400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:55337600-55348600	Weak transcription	Hela-S3	cervix
14	chr14:55337800-55345600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:55338000-55343200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:55338000-55346000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:55338200-55344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:55338400-55344600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:55341000-55345800	Weak transcription	Liver	Liver
20	chr14:55341800-55343400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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